gdc-client centos7

conda create -n gdc_python3 python=3.6.10 libxml2 libxslt libffi six requests progressbar2 intervaltree termcolor jsonschema pyyaml lxml

conda activate gdc_python3

conda install -c anaconda gcc_linux-64 gxx_linux-64

git clone https://github.com/NCI-GDC/gdc-client

cd gdc-client
pip install -r requirements.txt

# trouble shooting
cd $CONDA_PREFIX/lib/python3.6/
ln -s _sysconfigdata_m_linux_x86_64-linux-gnu.py _sysconfigdata_x86_64_conda_cos7_linux_gnu.py
cd 내경로/gdc-client
pip install -r requirements.txt

pip install --ignore-installed PyYAML

python setup.py install

pip install -r dev-requirements.txt

cd bin

./gdc-client download -m gdc_manifest파일txt -t gdc-user-token.파일_chmod.txt --log-file LOG_FILE.txt

 

위 명령어대로 하려면 bin에 gdc_manifest 파일과 gdc-user-token 파일이 위치해있어야 함.

다른 위치라면 해당경로까지 써주면 됨~